Arabidopsis Motif Scanner for Windows

Name: Arabidopsis Motif Scanner
Rating: 4 (1 reviews)
Author: IBBA-CNR

Download now

Used Arabidopsis Motif Scanner for Windows? Share your experience and help other users.

Key Details of Arabidopsis Motif Scanner

Unravel gene relations and functions.
Last updated on April 6, 2020
There have been 2 updates
Virus scan status:
Clean (it’s extremely likely that this software program is clean)

Developer’s Description

By IBBA-CNR

Unravel gene relations and functions.

Arabidopsis Motif Scanner (AMS) is a Windows application that runs on local computers. It was developed to build gene networks by identifying the positions of cis-regulatory elements in the model plant Arabidopsis thaliana and by providing an easy interface to assess and evaluate gene relationships. Its major innovative feature is to combine the cis-regulatory element positions, NGS and DNA Chip Arrays expression data, Arabidopsis annotations and gene interactions for the identification of gene networks regulated by transcription factors. In studies focused on transcription factors function, the software uses the expression data and binding site motifs in the regulative gene regions to predict direct target genes. Additionally, AMS utilizes DNA-protein and proteinprotein interaction data to facilitate the identification of the metabolic pathways regulated by the transcription factor of interest.